Add extensive documentation and examples across contribution, guides, templates and tools references. Key changes:
- Introduce a Developer Mode & Debugging section (dev_mode flags: trace, keep, pause, breakpoint, logs, dryrun, motd) in CONTRIBUTING.md with usage example.
- Provide a standard update_script() pattern and BookStack example in GUIDE.md to clarify update flow (stop services, backup, deploy, restore, migrate, restart).
- Add new helper entries (BookLore, KaraKeep) and advanced repository helpers (setup_deb822_repo, prepare_repository_setup, cleanup_tool_keyrings) plus utilities (setup_meilisearch, verify_tool_version) in HELPER_FUNCTIONS.md.
- Update install template to suggest PNPM, Java 21 and Meilisearch; update example DB setup notes in AppName-install.sh.
- Add var_diagnostics option and switch var_fuse to boolean/toggle wording in CONFIGURATION_REFERENCE.md; clarify privacy and defaults.
- Adjust example container definitions in UNATTENDED_DEPLOYMENTS.md (container entries and resource values).
- Change storage and flag variables and examples in BUILD_FUNC_USAGE_EXAMPLES.md (ssd-storage, var_fuse/var_tun, etc.).
- Expand TOOLS_FUNC_FUNCTIONS_REFERENCE.md with many setup_* function signatures, environment vars, clarified fetch_and_deploy_gh_release modes/parameters, and additional tool docs (nodejs, php, mariadb_db, postgresql_db, java, uv, yq, meilisearch, composer, build tools).
These updates improve onboarding, debugging guidance, and operational clarity for contributors and maintainers.
Documentation updates across guides and function references:
- Added var_gpu and var_tun configuration entries to CONFIGURATION_REFERENCE (GPU passthrough and TUN/TAP support), including features and prerequisites.
- Fixed repository URLs throughout UNATTENDED_DEPLOYMENTS and examples: replaced community-scripts/ProxmoxVED with community-scripts/ProxmoxVE and updated curl usage to the new paths.
- Added an "Advanced Configuration Variables" table and examples (var_os, var_version, var_gpu, var_tun, var_nesting) to UNATTENDED_DEPLOYMENTS; adjusted sample apps, hostnames, and container mappings in batch examples.
- Switched API endpoints in API_FUNCTIONS_REFERENCE and API_USAGE_EXAMPLES from http://api.community-scripts.org to https://api.community-scripts.org.
- Expanded BUILD_FUNC_FUNCTIONS_REFERENCE with container resource/ID management helper descriptions (validate_container_id, get_valid_container_id, maxkeys_check, get_current_ip, update_motd_ip).
- Large edits to TOOLS_FUNC_FUNCTIONS_REFERENCE: renamed/refactored helper signatures and docs (pkg_install -> install_packages_with_retry, pkg_update -> upgrade_packages_with_retry), added new tooling functions (fetch_and_deploy_gh_release, check_for_gh_release, prepare_repository_setup, verify_tool_version) and updated examples and feature notes.
- Updated vm/README.md to list additional VM scripts (new and reorganized examples).
These are documentation-only changes to clarify configuration options, correct links and endpoints, and expand the reference material for tooling and build helpers.
